PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G069200.1
Common NameB456_011G069200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 543aa    MW: 59978.2 Da    PI: 7.4023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G069200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07450490954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+RR+ri +++  L++l+P        K++ a++L +A  Y+k L
  Gorai.011G069200.1 450 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 490
                         69******************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25441490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-14446507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-13447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-12449504IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5450490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-4463495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MRLHPKQYGR ESKLHGVKPN ANRRYCIRNN VVKSCSSLKK VFVLYILPIY ISMHAFNTYY  60
DKLHLPRLTL AMVFFLGVDD HSFKEDGCSE SDIKLRFDPT LSYIRHSLVS FGKDNNQSGG  120
FLDLKKVSSM DGLGWNGSEI EAKSLPVWNN QRNDMEDSYF LIPNSSNSFM YGGKMDDLPE  180
DIFYQIQELQ KSGNLEDALQ QGLCSSPLMS RAYGFSTLNG SVSDIGMPVH SQGINGGDAT  240
TTGTLESLDC LISATNSNTD TSVEDDGISM IFSDCKNLWN FAASSAVSSG SENNGSNTGR  300
NEHDEIVSQS SSDRCINNGN LSQTKSSNSS KRKNDQTGLT FGPNCGYFNL LHTDLSATEG  360
GFKLIPDNPP KAKKIRSEKH SSSSNINFQQ PASSSVSSSI EEPDPEAIAQ MKEMIYRAAA  420
FRPVNLGLEV VEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQKLVPG GSKMDTASML  480
DEAASYLKFL RSQVKALENL GNKLDTMNAP PPSNIAFNHS LPMQTHSFPL LNPNDHIHHS  540
QS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450455RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5779741e-89JX577974.1 Gossypium hirsutum clone NBRI_GE9901 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456817.10.0PREDICTED: transcription factor bHLH87
SwissprotQ8S3D28e-86BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A0D2T3R20.0A0A0D2T3R2_G
STRINGVIT_09s0002g02700.t011e-138(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-73bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]